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Holographic Imaging of Biological Samples
Wenhai Liu, Jose Mumbru, Demetri Psaltis

Abstract. We are developing an imaging system with the ability of imaging a 3-D object plus its color spectrum information. The system makes use of the spatial and wavelength selectivity of volume holograms, which act as multiple focal-length lenses and color filters to separate 2-D slices with different color from the 3-D object into various detectors. The holographic microscope will be a powerful tool for imaging application in cell-biology, biochemistry, materials research and any other 3-D imaging application.

Motivation. Fluorescent probes are widely used in cell-biology, biochemical, medical applications and other materials research, because of its high detecting efficiency, compatibility with microscope optics, fast response, and sensitivity to the molecular structures and local environment. They are used as labels of different proteins and ion indicators, and for the measurement of the membrane potential, the PH-factor, etc. Within these applications, sometimes it is interesting to know all the 4-D information, including the accurate 3-D spatial location and the color spectrum that is sensitive to the local chemical environment (see Figure 1).


Figure 1. Human chromosome analysis.


A conventional microscope system can be used to image a 2-D slice of a 3-D object. If the 4-D information (3-D spatial and color spectrum) is to be collected, a scanning process is required for different depths and wavelengths, such as the confocal microscope with various color filters or the 3-D scanning spectroscope (see Figure 2). The scanning process, besides usually being time-consuming, may bleach the fluorescent probes due to the use of high intensities.


Figure 2. Architecture of a confocal microscope: 3-D imaging is achieved by scanning the microscope across the volume of the object.

One volume hologram can act as an imaging lens with an inherent color filter, due to the spatial selectivity of the hologram and the wavelength Bragg-matching property. However, within the dynamic range of the holographic medium, multiple holograms can be recorded into the same medium, which makes it possible to generate a holographic imaging element that behaves as a combination of imaging lenses and color filters (see Figure 3). Each hologram will image a 2-D slice of a 4-D (3-D spatial dimensions plus color information) object onto the detector. With the presence of multiple holograms, multiple 2-D slices of the object can be collected and imaged onto different areas on the detector at the same time, capturing the full 4-D information of the object.

Figure 3. Sketch of a holographic imaging system: Multiple 2-D images are obtained from different locations and colors of the object.

Research and Achievements. The goals of this project are to understand the imaging resolution of the holographic imaging system and compare it with other current technologies; to investigate the system design for optimal performance; and to validate the theoretical model through experimentation.

The basic performance of two holographic architectures is simulated with computer and then compared with experimental results. Parameters like image quality, the spatial resolution of the object, the color selectivity and the photon efficiency for the incoherent fluorescence are evaluated.

The first architecture is the 90-degree holographic recording between a spherical wave and a plane wave. The advantage of this architecture is that the holograms themselves replace the objective lenses in the microscope, therefore no expensive optical elements are required. However, both the simulation and the experiments indicate that the system suffers from aberrations in the degenerate direction of the hologram, which will distort the image and decrease the spatial resolution, as seen in Figure 4.


Figure 4. Experiment and theoretical simulation of the image of a point source in degenerate direction of a 90-degree hologram recorded with a spherical wave and a plane wave.

The second architecture overcomes this problem by using transmission-geometry holographic recording with a microscope objective as collimating lens (Figure 5). This implementation eliminates the aberration in the degenerate direction, and also gives the flexibility to adjust the thickness of the crystal for optimal resolution and efficiency trade-off. Figure 6 shows the simulation results for the depth resolution of a 700micron-thick hologram read out with incoherent chromatic light source.

Figure 5. Structure of a holographic imaging system with transmission holograms.


Figure 6. Theoretical simulation of the depth selectivity for the transmission-geometry holographic microscope. Each curve corresponds to a different chromatic component pof the object.

Using only one hologram recorded in a LiNbO3 crystal in transmission geometry, 2-D imaging of a mask is demonstrated for monochromatic light source and chromatic light, as shown in Figure 7.




Figure 7.
2-D image of a mask using the transmission-geometry holographic microscope. Top: Image of the mask when it is illuminated with monochromatic light. Only a line in degenerated direction can be imaged by the hologram. Bottom: Image of the same mask when it is illuminated with a broadband light source. The horizontal axis corresponds to different color components from the object.

Figure 8 shows the comparison between the direct optical microscope imaging and the holographic imaging. The specimen used in the experiment consists of 15micron-diameter fluorescent spheres arranged in two layers at different depths. The horizontal direction of the holographic image also gives the corresponding color spectrum of the fluorescence.


Figure 8. Experimental demonstration of holographic imaging of fluorescent microspheres.

An advantage of the holographic microscope over the conventional one is the possibility to image simultaneously different depths of the specimen. Figure 9 shows an experiment in which 3 holograms have been multiplexed in PQ-PMMA material. Each hologram has been tuned at a different depth. The system has been successfully used to image the movement of microspheres suspended in solution.

Figure 9. Imaging of microspheres in turbulence using three depth-multiplexed holograms. Left: Depth selectivity of the holograms. Right: Image on the CCD. Three bands can be simultaneously registered showing the movement of microspheres at three different depths into the solution.

Future Directions.
Further investigate the performance of the holographic imaging system; optimize the structure and parameter design; and compare the overall specification with the conventional confocal microscope on terms of efficiency, resolution and speed.

Related Links
. This work is done in cooperation with Prof. George Barbastathis at MIT.


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